vg::MSAConverter Class Reference

#include <msa_converter.hpp>

Inheritance diagram for vg::MSAConverter:

Public Member Functions
	MSAConverter ()
	~MSAConverter ()
void	load_alignments (istream &in, string format="fasta")
VG	make_graph (bool keep_paths=true, size_t max_node_length=numeric_limits< size_t >::max())
Public Member Functions inherited from vg::Progressive
void	preload_progress (const string &message)
void	create_progress (const string &message, long count)
void	create_progress (long count)
void	ensure_progress (long count)
void	update_progress (long i)
void	increment_progress ()
void	destroy_progress (void)

Private Attributes
vector< unordered_map< string, string > >	alignments

Additional Inherited Members
Static Public Member Functions inherited from vg::Progressive
static void	with_progress (bool show_progress, const std::string &task, const std::function< void(const std::function< void(size_t, size_t)> &progress)> &callback)
Public Attributes inherited from vg::Progressive
bool	show_progress = false

Constructor & Destructor Documentation

MSAConverter()

vg::MSAConverter::MSAConverter

(

)

~MSAConverter()

vg::MSAConverter::~MSAConverter

(

)

Member Function Documentation

load_alignments()

void vg::MSAConverter::load_alignments	(	istream &	in,
		string	format = "fasta" )

make_graph()

VG vg::MSAConverter::make_graph	(	bool	keep_paths = true,
		size_t	max_node_length = numeric_limits<size_t>::max() )

Member Data Documentation

alignments

vector<unordered_map<string, string> > vg::MSAConverter::alignments

private

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The documentation for this class was generated from the following files:

• src/msa_converter.hpp
• src/msa_converter.cpp