vg
tools for working with variation graphs
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Here is a list of all class members with links to the classes they belong to:
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_
~
- v -
v :
vg::TreeNode< T >
validate :
HaplotypesConfig
,
vg::MinimizerIndexParameters
validate_boundaries() :
vg::ZipCodeTree
validate_chain() :
vg::ZipCodeTree
validate_clusters() :
vg::MinimizerMapper
validate_seed_distances() :
vg::ZipCodeTree
validate_snarl() :
vg::ZipCodeTree
validate_zip_forest() :
vg::ZipCodeForest
validate_zip_tree() :
vg::ZipCodeTree
validate_zip_tree_order() :
vg::ZipCodeTree
validator :
vg::subcommand::ArgSpec< T, Receiver >
Valuation() :
vg::subcommand::Valuation< T >
Value :
vg::Option< vector< Item >, Parser >
value :
vg::BaseOption< Value, Parser >
,
vg::GAFSorterRecord
,
vg::MinimizerMapper::Minimizer
,
vg::ProblemDumpExplainer
,
vg::SmallBitset
,
vg::subcommand::Valuation< T >
,
vg::subcommand::ValueArgSpec< T, Receiver, Holder >
,
vg::WFAPoint
,
vg::ZipCodeForest::child_info_t
,
vg::ZipCodeTree::tree_item_t
value_at :
vg::NGSSimulator::MarkovDistribution< From, To >
VALUE_BITS :
vg::SmallBitset
VALUE_MASK :
vg::SmallBitset
value_set :
vg::subcommand::ValueArgSpec< T, Receiver, Holder >
VALUE_SHIFT :
vg::SmallBitset
value_type :
std::iterator_traits< vg::PhasedGenome::iterator >
,
std::iterator_traits< vg::ZipCodeTree::distance_iterator >
,
std::iterator_traits< vg::ZipCodeTree::seed_iterator >
,
vg::count_back_inserter< T >
,
vg::PhasedGenome::iterator
,
vg::SmallBitset
,
vg::VectorView< Item >::const_iterator
,
vg::WFAPoint
ValueArgSpec() :
vg::subcommand::ValueArgSpec< T, Receiver, Holder >
values :
vg::MinimizerMapper::aligner_stats_t::stat_collection_t
variant_alts :
vg::VG::Plan
variant_range :
vg::VariantAdder
variant_source :
vg::RareVariantSimplifier
variant_to_traversal :
vg::VG
VariantAdder() :
vg::VariantAdder
variants_after :
vg::WindowedVcfBuffer
variants_before :
vg::WindowedVcfBuffer
variation_level :
vg::PrimerPair
vars_per_chunk :
vg::Constructor
vcf_fixup() :
vg::VCFOutputCaller
vcf_header() :
vg::FlowCaller
,
vg::LegacyCaller
,
vg::MCMCCaller
,
vg::NestedFlowCaller
,
vg::VCFGenotyper
,
vg::VCFOutputCaller
vcf_is_phased() :
vg::IndexRegistry
vcf_to_fasta() :
vg::NameMapper
vcf_to_fasta_renames :
vg::NameMapper
VcfBuffer() :
vg::VcfBuffer
VCFGenotyper() :
vg::VCFGenotyper
VCFOutputCaller() :
vg::VCFOutputCaller
VCFTraversalFinder() :
vg::VCFTraversalFinder
Vectorizer() :
Vectorizer
VectorView() :
vg::VectorView< Item >
VectorViewInverse() :
vg::VectorViewInverse
verbose :
vg::GrefCover
,
vg::MinimizerIndexParameters
,
vg::ReadFilter< Read >
,
vg::RepresentativeTraversalFinder
Verbosity :
vg::HaplotypePartitioner
,
vg::Haplotypes
,
vg::IndexingParameters
,
vg::Recombinator
verbosity :
HaplotypesConfig
,
vg::HaplotypePartitioner
,
vg::IndexingParameters
,
vg::Recombinator
verbosity_basic :
vg::Haplotypes
verbosity_debug :
vg::Haplotypes
verbosity_detailed :
vg::Haplotypes
verbosity_extra_debug :
vg::Haplotypes
verbosity_silent :
vg::Haplotypes
verify_cover() :
vg::GrefCover
verify_disjoint() :
vg::GrefCover
verify_paths() :
vg::PhaseUnfolder
verify_valid_log_odds_score_matrix() :
vg::AlignmentScorer
VERSION :
vg::Haplotypes::Header
,
vg::Version
Version() :
vg::Version
version :
vg::Haplotypes::Header
,
vg::ZipCodeCollection
VERSION_WITH_TAGS :
vg::Haplotypes::Header
VG :
vg::IndexingParameters
,
vg::VG
vg :
vg::FlowSort
VGset() :
vg::VGset
visit_iteratee_t :
vg::algorithms::GFAParser
visit_next_node() :
vg::ExhaustiveTraversalFinder
,
vg::SupportRestrictedTraversalFinder
visit_source_t :
vg::algorithms::GFAParser
visited :
vg::HandleGraphNodeSet
visits_left() :
vg::SnarlManager
visits_right() :
vg::SnarlManager
Viz() :
vg::Viz
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