vg::algorithms::GFADuplicatePathError Struct Reference

#include <gfa_to_handle.hpp>

Inheritance diagram for vg::algorithms::GFADuplicatePathError:

Public Member Functions
	GFADuplicatePathError (const std::string &path_name)
	GFADuplicatePathError (const std::string &path_name, const GFAParser::cursor_t &position, const char *parsing_state=nullptr)
Public Member Functions inherited from vg::algorithms::GFAFormatError
	GFAFormatError (const string &message)
	We can make one from a message.
	GFAFormatError (const string &message, const GFAParser::cursor_t &position, const char *parsing_state=nullptr)
	We can also make one with a position and a possibly null parsing state.
virtual const char *	what () const noexcept

Additional Inherited Members
Public Attributes inherited from vg::algorithms::GFAFormatError
bool	has_position = false
GFAParser::cursor_t	position
size_t	pass_number = 0
size_t	line_number = 0
size_t	column_number = 0
string	file_name = ""
string	message_buffer

Detailed Description

This exception will be thrown if the GFA data includes multiple copies of what we take to be the same path. We need to be able to tolerate this situation at least in some cases because it is true of the HPRC first release graphs, which duplicate paths across P lines and rGFA tags.

Constructor & Destructor Documentation

GFADuplicatePathError() [1/2]

vg::algorithms::GFADuplicatePathError::GFADuplicatePathError

(

const std::string &

path_name

)

GFADuplicatePathError() [2/2]

vg::algorithms::GFADuplicatePathError::GFADuplicatePathError	(	const std::string &	path_name,
		const GFAParser::cursor_t &	position,
		const char *	parsing_state = nullptr )

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The documentation for this struct was generated from the following files:

• src/algorithms/gfa_to_handle.hpp
• src/algorithms/gfa_to_handle.cpp